Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42306g00001 ATGGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTCAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTTGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAATTTGGAGAATTGTACGCCTTTAAGTGGACTACTCTTCTAATTCCTCCAACCACTATCTTAATAATCAATATTGTTGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTCGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTTATATGGTCAGTGTTGTTAGCTTCCATTTTCTCCTTGCTATGGGTAAGAATCGACCCATTCGTCCTCAAAACTAAGGGTCCTGATACCAAGCTATGTGGAATCAACTGTTAA 534 0.4288 MATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYAFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42306g00001 177 Pfam Cellulose synthase 2 171 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trme42306g00001 177 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42306g00001 Trme-Chr42306 126 659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42306g00001 1 177 Cell Wall Biosynthesis AT5G17420 93.785 7.30e-115 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42306g00001 K10999 - gmx:100815436 355.91