Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme422884g00001 ATGCTAGACAAAGAAGGGAAAGCAAAAGTAACAGATTTTGGATTAGCTAGAATTGTTAATGTCGGCGATAGCCATGTGAGTACAATGGTTGCTGGAACTGTTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTACTACAAAAGGTGATGTTTATAGTTATGGTGTGTTGGTTATGGAGTTGGCTACAGGTAGAAAAGCAGTGGATGGAGGTGAAGA 224 0.3973 MLDKEGKAKVTDFGLARIVNVGDSHVSTMVAGTVGYVAPEYGQTMKATTKGDVYSYGVLVMELATGRKAVDGGE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme422884g00001 74 Pfam Protein kinase domain 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme422884g00001 74 SUPERFAMILY Protein kinase-like (PK-like) 1 72 IPR011009 -
Trme422884g00001 74 Gene3D Transferase(Phosphotransferase) domain 1 1 74 - -
Trme422884g00001 74 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 71 - -
Trme422884g00001 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme422884g00001 Trme-Chr422884 8 231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme422884g00001 1 68 Receptor kinase-like Gene Family AT5G07280 58.824 1.05e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Trme422884g00001 Pkinase 9.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme422884g00001 - - csav:115711545 137.887