Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42285g00001 GTGGACTATGCATGTACTCCTGAAGAAGTGCAGCAGCACTTCCAATCGTGTGGAACAGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCAAAAGGTTATGCTTATGTAGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTTTCGCTGAATGAATCTGAACTGCACGGACGTCAATTGAAGGTAACTGCTAAAAGAACCAATGTACCTGGGATGAAGCAATTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGGGGATGCGTTACAGCCCCTACTATTGA 378 0.463 VDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42285g00001 125 MobiDBLite consensus disorder prediction 69 90 - -
Trme42285g00001 125 SMART rrm1_1 1 66 IPR000504 GO:0003723
Trme42285g00001 125 Gene3D - 1 74 IPR012677 -
Trme42285g00001 125 CDD RRM_II_PABPs 1 66 - -
Trme42285g00001 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Trme42285g00001 125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 90 - -
Trme42285g00001 125 SUPERFAMILY RNA-binding domain, RBD 2 94 IPR035979 GO:0003676
Trme42285g00001 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 64 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42285g00001 Trme-Chr42285 411 952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42285g00001 1 65 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 1.35e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42285g00001 K14396 - gmx:100791351 202.986