Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42257g00001 ATGAAGGATTTTGAAGGGATTGCAAGGATAAGAAGGGTTGGTGAAGATAGGACATGGGAGGTGGAGGTGAAGTATGATCGGGAAGGTGATTATTCTCTTGTGAACAGTGGTTGGAAAGCATTTTCCAAGGAATATAACTTGCAAACTGGTGATGTTTGTAAGTTTAAGATGACTCGATCCGATCCACTTTCTTTTACTATTGCTATTACGCGAGCCTCAGAGGAACGAAGTCGTAAGAAGTAG 243 0.4156 MKDFEGIARIRRVGEDRTWEVEVKYDREGDYSLVNSGWKAFSKEYNLQTGDVCKFKMTRSDPLSFTIAITRASEERSRKK 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42257g00001 80 Gene3D - 2 75 IPR015300 -
Trme42257g00001 80 Pfam B3 DNA binding domain 15 72 IPR003340 GO:0003677
Trme42257g00001 80 CDD B3_DNA 12 71 IPR003340 GO:0003677
Trme42257g00001 80 SUPERFAMILY DNA-binding pseudobarrel domain 15 74 IPR015300 -
Trme42257g00001 80 ProSiteProfiles B3 DNA-binding domain profile. 1 73 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42257g00001 Trme-Chr42257 111 353 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme42257g00001 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42257g00001 - - tpra:123901651 112.079