Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42245g00001 GTTGTAACCGCCTTGTTCAACCTGTCGATCTACGACAACAATAAGATTCTAATCATGGCAGCCGGAGCTGTCGACAATATAGTCGAAGTACTCGAATCGGGAAAAACAATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGCTTATCAATGTTAGATGATTGTAAAGTGCAAATTGGAGCAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATTGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAATAAGTTAAGTATTGTTAAAAGCGGAGCAGTTAATTTGCTTGTTGAGTTGTTGATGGATGATAAAGCCGGTATAACGGACGATTCATTGGCGGTGTTGGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAAAATTGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCGGTTAAAGGGAAGGAAAATTCGATAACCGTTTTACTCGGATTGTGTAAAGAAGAAGGAGAATTGGTTGCAAGGAAGTTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 693 0.381 VVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVNLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNCKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42245g00001 230 FunFam RING-type E3 ubiquitin transferase 36 223 - -
Trme42245g00001 230 SMART arm_5 11 52 IPR000225 GO:0005515
Trme42245g00001 230 SMART arm_5 136 177 IPR000225 GO:0005515
Trme42245g00001 230 SMART arm_5 95 135 IPR000225 GO:0005515
Trme42245g00001 230 SMART arm_5 53 94 IPR000225 GO:0005515
Trme42245g00001 230 Gene3D - 1 229 IPR011989 -
Trme42245g00001 230 PANTHER U BOX DOMAIN-CONTAINING 2 224 - -
Trme42245g00001 230 SUPERFAMILY ARM repeat 2 219 IPR016024 -
Trme42245g00001 230 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 65 107 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42245g00001 Trme-Chr42245 1 693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42245g00001 2 223 U-box Gene Family AT1G23030 46.222 1.07e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42245g00001 - - tpra:123924117 405.216