Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42188g00001 AACCATGTTCTTGGAGTTGAATTCGATATAGTTCAAAACCAAGAAGAATTCAATGATATAAATGACAACCATGTTGGTGTTGACATAAACTCGCTTAGATCCTTAACTTCTCACGAGGCTGGCTACTGGGGTGGAAAAGATGACAATGAATTTAAGGTGTTGAAGATAAAAAGCGGAGAAAATTATCAAGTATGGATTGAATTTATTCATTCCCGGCTAAACGTTACAATGGCTCGGGCAGGACAAAAGAGGCCCCATGTTCCTCTCATCAGTATAAATGTTAACCTTTCTGGGGTCCTTATGGATGAAACATACGTTGGATTTTGTGCAGCCACAGGGCGATTAATAGACAGTACTAAGATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGCGATGCTTTAGTGACAGACAACTTGCCTTCATTTGTTCCTCATAAGGGATGGTTTTTTGGAGCGAAGGCTATAGCTGTAGGAGTCACTGGTGTTGTCTGTGTCTTAATCATCGGTTGCGGTTGTGTAGTGTTTTTCATCCTATATAGGGGAGAAAAGGAAAAAGAAGAAATTGAAGAGTGGGAACTAGAGTATTGGCCACATAAAATTTGTTTCCAAGAGATTCATGCAGCAACAAGAGGGTTTTCTAAAGAGAATGTGGTTGTTGTAGGAGGGAACAAAAGTGTATATAAAGGTGTTTTGCAAGGAGTTGAAGTTGCGGTCAAGAGAATCCCGCAAGAAAGAGAAGGGATGCGAGAATTTTTGGCAGAGGTTTCAAGCCTAGGAAGATTGAAACACAAAAATTTAGTAGGACTTATAGGTTGGTGCAAAAAAGAGAAGGGAAACTTGATTCTAGTTTATGACTTCATGAATAATGGAAGTTTAGACAAATGGATTTTTGAGTGTGAAGATGGAAAGATGCTAACATGGGATGAGAGGATTCAAGTTCTAAAAAATGTAGCCGCGGGGATTCTATACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATAGGGACATCAAAGCAA 1027 0.3924 NHVLGVEFDIVQNQEEFNDINDNHVGVDINSLRSLTSHEAGYWGGKDDNEFKVLKIKSGENYQVWIEFIHSRLNVTMARAGQKRPHVPLISINVNLSGVLMDETYVGFCAATGRLIDSTKILAWSFSNTNFSIGDALVTDNLPSFVPHKGWFFGAKAIAVGVTGVVCVLIIGCGCVVFFILYRGEKEKEEIEEWELEYWPHKICFQEIHAATRGFSKENVVVVGGNKSVYKGVLQGVEVAVKRIPQEREGMREFLAEVSSLGRLKHKNLVGLIGWCKKEKGNLILVYDFMNNGSLDKWIFECEDGKMLTWDERIQVLKNVAAGILYLHEGWEVKVLHRDIKA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42188g00001 342 Gene3D Transferase(Phosphotransferase) domain 1 290 342 - -
Trme42188g00001 342 CDD lectin_legume_LecRK_Arcelin_ConA 1 129 IPR001220 GO:0030246
Trme42188g00001 342 ProSiteProfiles Protein kinase domain profile. 215 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42188g00001 342 Gene3D Phosphorylase Kinase; domain 1 180 289 - -
Trme42188g00001 342 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 176 289 - -
Trme42188g00001 342 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 278 IPR013320 -
Trme42188g00001 342 PANTHER - 1 342 - -
Trme42188g00001 342 Gene3D - 1 149 - -
Trme42188g00001 342 SUPERFAMILY Protein kinase-like (PK-like) 197 342 IPR011009 -
Trme42188g00001 342 Pfam Legume lectin domain 1 130 IPR001220 GO:0030246
Trme42188g00001 342 Pfam Protein tyrosine and serine/threonine kinase 228 342 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42188g00001 Trme-Chr42188 1 1027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42188g00001 1 342 Receptor kinase-like Gene Family AT4G04960 56.571 1.90e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme42188g00001 Lectin_legB 9.2e-33 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42188g00001 - - gmx:100776006 556.214