Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42159g00001 AGCTACTACAAATGCACAAGTGATGGATGTAATGTAAGGAAACATGTGGAAAGGGCTTCACATGATCTCAAATATGTTATTACTACTTATGAGGGAAAACATAACCATGAGGTTCCCACTTCAAGAAATAACAATCAGATAAGCTCAAATGACATTGCTTTGCCTTCTTGTGGTGATAATATGCAAGTCTCCAATATCTCAAAGTTTGAAACTCATCAAACTCTTGCACCTCATTTTGATAGAAAACCATATTTTAGCAATGAGTTTATGAGACCAAGTTCGATCGGAAGTTTCAGTAATGATATGAAATTTGGACCATCATCAACTTCCATGTTCCAAAGGAAGTATCCTTCCTTGAATAGTATCATACCTTATGGATCCTACGGAACAAATTCTGACCATGGTGTTGCGCCTCAAGCCGGACCTATTGGTACAAGGTTTCCAATGCCGCTACCATTGAATCTTCCCTCATCTGAAATATTTCCTCTATCTAGAAATATTTTTAACTATGCAAAACCATTAAATTATATCCAGTCTTACCTTTCAGGTCAACATATGAATGACATTGATACAAGGTTTCTTGATCATACAAGTACCTCACTCACTCCACCATCAACATTGATTTATCAAAGTGTCATGCAAAATTTCCCTTCATAA 657 0.3623 SYYKCTSDGCNVRKHVERASHDLKYVITTYEGKHNHEVPTSRNNNQISSNDIALPSCGDNMQVSNISKFETHQTLAPHFDRKPYFSNEFMRPSSIGSFSNDMKFGPSSTSMFQRKYPSLNSIIPYGSYGTNSDHGVAPQAGPIGTRFPMPLPLNLPSSEIFPLSRNIFNYAKPLNYIQSYLSGQHMNDIDTRFLDHTSTSLTPPSTLIYQSVMQNFPS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42159g00001 218 ProSiteProfiles WRKY domain profile. 1 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme42159g00001 218 SUPERFAMILY WRKY DNA-binding domain 1 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme42159g00001 218 SMART WRKY_cls 1 38 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme42159g00001 218 Pfam WRKY DNA -binding domain 1 37 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme42159g00001 218 Gene3D WRKY domain 1 40 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme42159g00001 218 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 64 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42159g00001 Trme-Chr42159 357 1013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42159g00001 1 42 WRKY Transcription Factor Family AT5G56270 83.333 1.02e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme42159g00001 WRKY 3.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42159g00001 K18835 - gmx:100800211 256.529