Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42052g00001 ATGCAAGGACCCTTGGAATTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCATCCCAATCTGATCACTCTTATAGGAGCCTGTCCAGAATCTTGGTCTCTTGTCTATGAGTATTTACCAAATGGAAGTCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCATTATCATGGCAAACGCGGATTCGTATTGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTACATGGTGACTTGAAACCCTCCAATATCATCCTAGATGCAAACCTTGTCAGTAAGCTTAGCGACTTTGGAATCTGTCGCATATTATCAAATTACGAGAATTCAAGTAATAATAACACACAGTTTTGGAAAACCGATCCAAAAGGGACTTTTGTCTATATGGATCCGGAATTCCTTGCTTCCGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACCGGGAGACCAGCTTTGGGAATAACTAAGGAAGTGAAATATGCTGTAGATACCGGAAAGTTAACATCTTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAGCAGTTGGCTCGCTTGGCTTTGCGGTGTTGTGAGATGAATAGGAAGAGTCGGCCGGACCTTCATTCAGATGTATGGAGGGTATTGGATGCAATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGTCTAAGTTCTGAAGGGCCTCACCAACCTCCTTCATATTTTATCTGTCCAATCTTCCAG 795 0.4377 MQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNNTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLHSDVWRVLDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42052g00001 265 Pfam Protein kinase domain 7 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42052g00001 265 ProSiteProfiles U-box domain profile. 254 265 IPR003613 GO:0004842|GO:0016567
Trme42052g00001 265 SUPERFAMILY Protein kinase-like (PK-like) 4 225 IPR011009 -
Trme42052g00001 265 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42052g00001 265 PIRSF ILK 4 249 - -
Trme42052g00001 265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 85 97 IPR008271 GO:0004672|GO:0006468
Trme42052g00001 265 PANTHER OS02G0152300 PROTEIN 2 238 - -
Trme42052g00001 265 Gene3D Phosphorylase Kinase; domain 1 2 43 - -
Trme42052g00001 265 Gene3D Transferase(Phosphotransferase) domain 1 44 244 - -
Trme42052g00001 265 SMART serkin_6 6 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42052g00001 Trme-Chr42052 12 996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42052g00001 2 265 U-box Gene Family AT2G45910 71.591 2.58e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme42052g00001 Pkinase 7.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42052g00001 - - gmx:100807515 506.908