Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42051g00001 ATGGGTTATTTCCTTTTCATTGCTCTCACTTTTGTGTTGAGCTTCCATATTCATTTTACTCGAGGAAGTGAATTGCGCCCTACTACCGAAACAAGCAGTTCAAAAATATACATTATTCATGTGAATGAGCCAGAGGGTAAGATGTTCACTCAATCAGATTCAGAAGAAGATTTAGAAAGTTGGCACCATTCATTCATGCCAGCTACTGTTATGAGCTCTAATGAACAACCGTCGCGGATGATTTATTCATACCGAAATGTGTTGAGTGGTTTTGCTGCAAGANNNNNTNNNNNNNNNNTNNNNNNNNNNGAACAGAAAAATGGCTTCATTTCAGCTCATCCCGAAAGGACACTACGCCGTCAAACCACACATACCCCGGATTTCTTGGGGTTGCAGCAAAATATAGGATTATGGAAGGATTCTAATTTTGGAAAGGGAGTTATTATCGGTGTTCTGGATTCAGGAATCACACCTGATCATCCTTCATTCAATGATGCAGGAATAGCACCACCACCATCCAAATGGAAAGGACGATGCGAACTTAATGGTACAGCTTGTAACAACAAACTAATTGGAGCAAGATCCTTCAACAACGCGGTTACTAAAACCGAGGCCCCAATTGATGAGGATGGACATGGGACTCACACGGCAAGTACAGCGGCTGGTGCTTTTGTCGACAATGCAGATGTGCTAGGAAATGCCAAAGGTACAGCAGCAGGGATTGCCCCTCACGCTCACCTA 741 0.4184 MGYFLFIALTFVLSFHIHFTRGSELRPTTETSSSKIYIIHVNEPEGKMFTQSDSEEDLESWHHSFMPATVMSSNEQPSRMIYSYRNVLSGFAARXXXXXXXXXEQKNGFISAHPERTLRRQTTHTPDFLGLQQNIGLWKDSNFGKGVIIGVLDSGITPDHPSFNDAGIAPPPSKWKGRCELNGTACNNKLIGARSFNNAVTKTEAPIDEDGHGTHTASTAAGAFVDNADVLGNAKGTAAGIAPHAHL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42051g00001 247 Gene3D Peptidase S8/S53 domain 146 247 IPR036852 GO:0004252|GO:0006508
Trme42051g00001 247 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 37 247 IPR045051 -
Trme42051g00001 247 ProSiteProfiles Serine proteases, subtilase domain profile. 128 247 - -
Trme42051g00001 247 SUPERFAMILY Subtilisin-like 108 245 IPR036852 GO:0004252|GO:0006508
Trme42051g00001 247 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 149 160 IPR023827 -
Trme42051g00001 247 Pfam Subtilase family 144 236 IPR000209 GO:0006508|GO:0008236
Trme42051g00001 247 Pfam Peptidase inhibitor I9 37 94 IPR010259 -
Trme42051g00001 247 PRINTS Subtilisin serine protease family (S8) signature 144 163 IPR015500 -
Trme42051g00001 247 PRINTS Subtilisin serine protease family (S8) signature 208 221 IPR015500 -
Trme42051g00001 247 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 120 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42051g00001 Trme-Chr42051 1 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42051g00001 37 247 Subtilisin-like Serine Gene Family AT3G14067 41.410 3.00e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42051g00001 - - lja:Lj4g3v1327500.1 353.599