Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42040g00001 ATGGATATTGTTGGAATCAGTGAGGAGGAACAGGAGGCTATTTTTAGGGTCGTAGCAGCAGTTTTGCACCTTGGAAATGTTGAATTTGCAAAAGGAGAGGAGATTGATTCTTCTGTCCTTAAGGATGAGAAGTCTAGGTTCCATCTTAATACGACTGCTGAGCTTCTCAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCCAGCGTGTGATGGTAACACCTGAGGAGGTTATTACAAGAACACTTGATCCTATTGCAGCTCTCGGTAGCAGGGATGCACTAGCTAAAACTATTTATTCTCGTTTGTTTGACTGGCTAGTGGAGAAGATCAACAATTCAATTGGGCAAGATCCAAATTCAAAATCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTTAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTGCAGCAACATTTTAATCAG 477 0.3941 MDIVGISEEEQEAIFRVVAAVLHLGNVEFAKGEEIDSSVLKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPIAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42040g00001 159 FunFam Myosin 2 7 123 - -
Trme42040g00001 159 PANTHER MYOSIN 1 159 - -
Trme42040g00001 159 Gene3D - 131 159 - -
Trme42040g00001 159 Gene3D Myosin VI head, motor domain, U50 subdomain 7 130 - -
Trme42040g00001 159 Pfam Myosin head (motor domain) 1 159 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme42040g00001 159 ProSiteProfiles Myosin motor domain profile. 1 159 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme42040g00001 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 159 IPR027417 -
Trme42040g00001 159 SMART MYSc_2a 1 159 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42040g00001 Trme-Chr42040 17 1000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42040g00001 1 159 Myosins gene family AT5G20490 88.679 6.38e-96 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42040g00001 K10357 - csv:101204300 310.457