Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme420291g00001 ATGGGTGTTGGGAACAAAGGGAATCCTCGAAACGGAGAACATCAAGCTTTGTCTCTCAACCATCTTCTCTCTGGGAGAAAGATTCTTATCGTAGATGATAATAGTGTGAATCGTACGGTAGCTGCTGGCGCTTTAAAAAAATATGGAGCTGGTGTGGTTTGCGTAAGCAGTGGAATCGAAGCCATCACTATGCTGACGCCACCCCATGAGTTTGACGCGTGTTTCATGGATATTCAAATGCCTGAAATGGATGGGTATGCATCTTAA 267 0.4457 MGVGNKGNPRNGEHQALSLNHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLTPPHEFDACFMDIQMPEMDGYAS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme420291g00001 88 CDD REC_hyHK_CKI1_RcsC-like 28 86 - -
Trme420291g00001 88 Pfam Response regulator receiver domain 28 86 IPR001789 GO:0000160
Trme420291g00001 88 Gene3D - 7 88 - -
Trme420291g00001 88 ProSiteProfiles Response regulatory domain profile. 27 88 IPR001789 GO:0000160
Trme420291g00001 88 PANTHER TWO-COMPONENT HISTIDINE KINASE 13 86 - -
Trme420291g00001 88 SUPERFAMILY CheY-like 23 86 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme420291g00001 Trme-Chr420291 3 269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme420291g00001 1 88 Miscellaneous Gene Families AT1G27320 67.045 1.26e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme420291g00001 Response_reg 1.6e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme420291g00001 K14489 - tcc:18608973 139.428