Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42028g00001 ATGGTCACTCCATCTTGCTTAGAAATTGGATTCTGTGGGAAAAAGAGAGCAAGGAGAACGTTCTCCGACCATGTTATTTCTCTACATCATTTATCATCATTACCTAGCAGGATTTTCACTAATGGAAAGAGTCGTGGTTCGTGCATATTTACGCAGCAGGGCCGTAAGGGAATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCCGAAGATATGATCTTTTGTGGTGTTTTTGATGGCCATGGTCCACAAGGTCATCTTGTTGCGCGTAAAGTGAGAGATACCTTGCCAGTAAAATTGCTTTCGTTTTTGCATTCTTATGAATCAAAGCGAAACGGGTCTGACAAAGCTTGTTTGAAACGGAACATGAAATCGGATGGTGGAGATACTGAGAAGGATATTTCTTCTGAGGATAAACTGAACTCCACATGGAAAGAAGCTTTCATGAAAGCATACAAGGCTATGGACAAAGAGCTCAGTTCTCATCCGAAACTCGACTGCTTCTGTAGTGGGAGCACATCTGTGACTATAGTGAAGCAGGGTTCAAATCTCTTCATGGGATATATCGGGGATTCTCGAGCAATCATGGGATCCAAAGACAGCAATGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTACCAAGAGAAGCAGAAAGAATCAAGCAGTGCAAGGGTAGGGTTTTTGCTTTGCAAGATGAACCGGAAGTGTCTAGG 735 0.4299 MVTPSCLEIGFCGKKRARRTFSDHVISLHHLSSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPQGHLVARKVRDTLPVKLLSFLHSYESKRNGSDKACLKRNMKSDGGDTEKDISSEDKLNSTWKEAFMKAYKAMDKELSSHPKLDCFCSGSTSVTIVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVSR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42028g00001 245 PANTHER PROTEIN PHOSPHATASE 46 237 IPR015655 GO:0004722|GO:0006470
Trme42028g00001 245 ProSiteProfiles PPM-type phosphatase domain profile. 46 245 IPR001932 -
Trme42028g00001 245 Gene3D - 39 245 IPR036457 -
Trme42028g00001 245 SMART PP2C_4 30 245 IPR001932 -
Trme42028g00001 245 Pfam Protein phosphatase 2C 116 235 IPR001932 -
Trme42028g00001 245 SUPERFAMILY PP2C-like 38 235 IPR036457 -
Trme42028g00001 245 CDD PP2Cc 45 245 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42028g00001 Trme-Chr42028 1 990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42028g00001 6 245 PP2C-type Phosphatase Gene Family AT1G03590 72.199 9.58e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42028g00001 - - gmx:100813306 443.351