Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41g00002 ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNTTGCTTAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGAACTGGGAAGCTTTATGAGTTTTCAAGCAAAAGCATGGAGCACACCCTTTCAAGGTACGGTACTAGAAGTCTTGATTTGAATAATGGAGCAGAGCAACAACAACAACAACAACCTAGTGGTGATGAGCCTCCAGCAGAAGTTGTGGAGCCTGATACTGCCCTTTTGCAAGAAGAAATAACAAAACTTCGTTCATCTTACTTAAGGATGAGTGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAAAATCAACTGTGTGAAGGGATATGTGCTGTCAAAAACAAGAAGGGCAGACCTAATTGTATGTAG 471 0.3694 MGRGKIEIKKIXXXXXXXXXXXXXXXXLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSKSMEHTLSRYGTRSLDLNNGAEQQQQQQPSGDEPPAEVVEPDTALLQEEITKLRSSYLRMSGKELDGLGLKELQYLENQLCEGICAVKNKKGRPNCM 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41g00002 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 57 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Trme41g00002 156 MobiDBLite consensus disorder prediction 68 91 - -
Trme41g00002 156 Pfam K-box region 101 150 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trme41g00002 156 Gene3D - 25 91 IPR036879 GO:0003677|GO:0046983
Trme41g00002 156 MobiDBLite consensus disorder prediction 68 102 - -
Trme41g00002 156 Coils Coil 28 35 - -
Trme41g00002 156 Coils Coil 11 11 - -
Trme41g00002 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme41g00002 156 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41g00002 Trme-Chr41 5191 7090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41g00002 1 152 MADS-box Gene Family AT5G13790 44.737 2.10e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trme41g00002 K-box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41g00002 - - lang:109353632 169.474