Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme419337g00001 ATGGTGTCTGGTTCAGGTGTCTGTGCAAAGAGGGTTGTAATCGATGGAAGGCATCACATGTTAGGAAGACTTGCATCAATTGTTGCAAAGGAACTTCTCAATGGTCAGAAAGTTGTTCTTGTTAGATCTGAAGAGATTTGCATTTCTGGTGGTATTGTTAGACAGAAGATGAAATACATGAGATTTCTTC 190 0.3947 MVSGSGVCAKRVVIDGRHHMLGRLASIVAKELLNGQKVVLVRSEEICISGGIVRQKMKYMRFL 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme419337g00001 63 SUPERFAMILY Ribosomal protein L13 12 62 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trme419337g00001 63 PANTHER RIBOSOMAL PROTEIN L13 1 61 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trme419337g00001 63 Gene3D Ribosomal protein L13 7 63 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trme419337g00001 63 Pfam Ribosomal protein L13 10 59 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme419337g00001 Trme-Chr419337 23 212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme419337g00001 1 63 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 85.714 1.73e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme419337g00001 K02872 - zju:107426592 120.168