Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41927g00001 ATGCACTACAATGTGGATGTGAAGGCTACTGTGCCACCGAAAAAGGGTTTGCCTCCAAAGAAGATTTCCAAGTCTGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTCAGACACTACCTTTGTTGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCCATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCAAAAGGAGAAGATGAAAGAGCTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTCGAGCTTCGCAAGTTGAGAGATTACCTTAGTTGCAGAGTCTATTCCATTCCGAGGGATATTTTACAGGGAATGGACTTGGTGGTGAAGGAGAATCCAGCAAGGAGCACAATTGCTTTAGGAAGATATTTCTTTCCCAACAATCCTCCCATGGTGCAGAGGGATCTTGAACCCGGAATAATTGCAATTGGAGGGTTTCAACATAGTCTCAAGACCACAGCTCAGGGTTTATCTTTGTGTCTTGACTCTTCAGTTTTGTCTTTCCGAAAGAAAATGTCAGTCTTGGATTTCCTCCATGATCGTATTAGGGGTTTCAATTTGGCTGAGTTTTGGAAATATAAGAAAGCTGTCGAGGAGGAACTCCTTGGATTGAAAGTAAATGTCACTCACAGGAGAACCAAACAGAAATACACCATTGCTAGGTTAACACCTAAAGATACGCGCCATATCACTTTCCCTATTTTGGGCCAAGATGGCCAAAACCTCCCCGGAAGCACCTCTCTTCTTGCCTACTTTAAACAAAAATATGGCATCAATATTGAATACAAAGATATTCCTGCCTTGGATTTTGGGGGAAACAAGACTAATTT 860 0.4186 MHYNVDVKATVPPKKGLPPKKISKSDLSMIRDQLFADHPQTLPLLKTAYDGEKSIFSAVPLPEETFTVEVSKGEDERAVSYTVTITLVNKLELRKLRDYLSCRVYSIPRDILQGMDLVVKENPARSTIALGRYFFPNNPPMVQRDLEPGIIAIGGFQHSLKTTAQGLSLCLDSSVLSFRKKMSVLDFLHDRIRGFNLAEFWKYKKAVEEELLGLKVNVTHRRTKQKYTIARLTPKDTRHITFPILGQDGQNLPGSTSLLAYFKQKYGINIEYKDIPALDFGGNKTN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41927g00001 286 SMART DUF1785_2 128 181 IPR014811 -
Trme41927g00001 286 MobiDBLite consensus disorder prediction 1 20 - -
Trme41927g00001 286 Gene3D paz domain 177 286 - -
Trme41927g00001 286 SUPERFAMILY PAZ domain 99 283 IPR036085 GO:0005515
Trme41927g00001 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 283 - -
Trme41927g00001 286 Pfam N-terminal domain of argonaute 2 118 IPR032474 -
Trme41927g00001 286 CDD PAZ_argonaute_like 182 284 - -
Trme41927g00001 286 ProSiteProfiles PAZ domain profile. 207 279 IPR003100 GO:0005515
Trme41927g00001 286 Pfam PAZ domain 201 284 IPR003100 GO:0005515
Trme41927g00001 286 Pfam Argonaute linker 1 domain 130 180 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41927g00001 Trme-Chr41927 1 860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41927g00001 48 286 Eukaryotic Initiation Factors Gene Family AT1G48410 33.463 1.14e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41927g00001 K11593 - gmx:100805250 402.905