Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41924g00001 ATGGCCGAGTCACAAAGTGGTGCTGGTAGTTCAGGAAACAAGCGCAGTAAAGGCACCAATGCTGCAAAGCGTGCAATGGCAGGAGTGACGCAAGATGCATCGACTGTACCCCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTGATGGGTGTATCTTTGCACCCTACTTTGGGACAGACCAAGGTGCGGCTAGATTTGCGGCTGTGCACAAGGTGTTTGGTGCCAGCAATGTGTCCAAACTCTTGTCCAGTATTTCGACTAACCACCGCCATGAAGCCGCAGCAACTATTTCCTATGAGGCTCAGGCTAGGCTATCTGATCCTGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTTAAGTAA 381 0.5039 MAESQSGAGSSGNKRSKGTNAAKRAMAGVTQDASTVPPCGACKFLRRKCSDGCIFAPYFGTDQGAARFAAVHKVFGASNVSKLLSSISTNHRHEAAATISYEAQARLSDPVYGCVSTILALQQQVK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41924g00001 126 PANTHER LOB DOMAIN CONTAINING PROTEIN 37 125 - -
Trme41924g00001 126 ProSiteProfiles LOB domain profile. 37 126 IPR004883 -
Trme41924g00001 126 MobiDBLite consensus disorder prediction 1 18 - -
Trme41924g00001 126 Pfam Lateral organ boundaries (LOB) domain 38 126 IPR004883 -
Trme41924g00001 126 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41924g00001 Trme-Chr41924 341 721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41924g00001 1 125 AS2 family AT3G03760 63.768 2.36e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme41924g00001 LOB 9.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41924g00001 - - aprc:113866578 179.874