Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme419137g00001 TCTGCTTCTAAAACTCCAGTTCCTTCCAAGAAATCAAAAAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGCTGGACATACAGCAACTCCTCACCCTAAGAAGGGTGGAAAAACCCCCACCACAGATGGCAAAAGTCCTAAATCTGGAGGACAACTAACCTGCGGTAGTTGCAGCAAGACATTCAACTCTGAAACTGGACTGCAACAACACAGCAAAGCCAAGCATGGTGCTCAGTGA 240 0.4583 SASKTPVPSKKSKNATPEKTDGKKAGHTATPHPKKGGKTPTTDGKSPKSGGQLTCGSCSKTFNSETGLQQHSKAKHGAQ 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme419137g00001 79 ProSitePatterns Zinc finger C2H2 type domain signature. 55 76 IPR013087 -
Trme419137g00001 79 SUPERFAMILY beta-beta-alpha zinc fingers 53 77 IPR036236 -
Trme419137g00001 79 MobiDBLite consensus disorder prediction 1 79 - -
Trme419137g00001 79 Gene3D Classic Zinc Finger 53 79 - -
Trme419137g00001 79 MobiDBLite consensus disorder prediction 42 73 - -
Trme419137g00001 79 MobiDBLite consensus disorder prediction 14 28 - -
Trme419137g00001 79 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 79 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme419137g00001 1 78 C2H2 Transcription Factor Family AT5G03740 50.000 1.56e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme419137g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme419137g00001 - - gmx:100795506 115.161