Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme419077g00001 ATGGGTGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAGTATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCTGGATATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTGTTGGAATGAAGAAAACTCTTGTATTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTTATGCATGAATTTAGATTGGATGGAAAATTAGCAACTTGCAACCTTCCTAAGGATGCAAAG 273 0.3626 MGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGKLATCNLPKDAK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme419077g00001 91 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 78 - -
Trme419077g00001 91 Pfam No apical meristem (NAM) protein 2 77 IPR003441 GO:0003677|GO:0006355
Trme419077g00001 91 Gene3D NAC domain 1 90 IPR036093 GO:0003677|GO:0006355
Trme419077g00001 91 ProSiteProfiles NAC domain profile. 1 91 IPR003441 GO:0003677|GO:0006355
Trme419077g00001 91 SUPERFAMILY NAC domain 2 82 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme419077g00001 Trme-Chr419077 10 282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme419077g00001 1 91 NAC Transcription Factor Family AT5G61430 81.319 2.67e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme419077g00001 NAM 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme419077g00001 - - vvo:131594542 188.734