Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4189g00001 ATGAATTTAATAACATTTGGTCCTTGTGTGAATGAAGATCCAATTACTTTTGAAGAAGCAGAAAAAAGTGACATATGGAGGAAAGCTATGAACATTGAACTTGAATCCATAGAGAGAAACAATACTTGGCAGTTAACAGATCTTCCTAAAGTAGCAAAGGGATATGCTCAGAGATATGGTACTGATTATAAAGAAGTATTTGCACCTGTTGCTAGGTGGGACACTATAAGAAGTTTGTTGGCCATTGCAGCTTTAAATGAATGGAGTGTGTTTCAATTAGATGTGAAAAGTGCATTCCTACATGGAGAGTTGAGTGAAACTGTGTATGTGGAGCAACCTCCAGGCAATATGATCAAAGGATTCAAAGACTCTATGATGAATACTTTTGATATGACTGACTTGGGGAAGATGAGGCACTTTCTTGGCATTGAAGTAACTCAAAGCAGTGAGGGTATATTTGTATGTCAGCAAAAATATGCTAAAGATATCTTAGAAAAATTCAAAATGGACAAAAGCAATGCTGTTTGTAGTCCTATAGTGACTGGCACTAGACTTTCAAAACATGACAAAGGAGATGAGGTGAATCCTACTGAATTCAAACAAATTATAGGCAGTTTAATGTATTTAACTGCTACTAGACCAGACTTAATGTTTGTAGTGCATATGATAGCCAGATTCGTGGAGCATCCTGTTGAAACACACATGATGGCTGCCAAGAGGATTCTGATATACATAAAAGGCACATTAGATTTGGGAATCCTATACAAAAAGGGAATGAAAGCTGAACTTGTAGCATACTCTGACAGTGACTATGGTGGAGATATAGATGACAGGAAAAGTACCTCTGGATATGTGTTTATGATAGGATCTGGAGCAGTATCTTGGTTATCAAAGAAGCAACCAATTGTTACATTATCAACTACTGAGGCTGAGTTCATTGCTGCAGCTCATTGTGTATGTCAAGGTATTTGGATGGAAAGAATTCTTAACTATATGGGATTGAAACAACAGGAGTGTTTTAAAGTCTTTTGTGATAACAGTTCAACTATCAAATTGAGCAAAAATCCAGTACTTCATGGAAGAAGTAAACATATAGACATAAGATTCCATTTCTTAAGGAATTTGAGTTGTGAAGGAGCTGTAGAGTTGGTGCATTGCTCTTCTCAAAATCAAATGGCTGATATAATGACTAAGACTCTGAAGTTGGAGACATTTGAAAAGCTCAGACAAGGTCTTGGAGTTTGCAGCAGCTCCAGCTTGAACTTGAACCAACAGGAGGTGTATCTTGGGAAGCAAATCTGCAACATGGTGGCGTGTGAAGGAACGGACCGGGTCGAGCGTCATGAGACTTTGAACCAGTGGAGGAACCGGTTCGGTTGGGCTGGGTTTTCTTCGTTACATTTGGGATCTAATGCGTTATTGCGAGCGAGTCTTTTGTTGTCGCTTTTCAGCAGGGATGGTTACAAGGTGGAAGAGAATGATGGTTGTCTCATGCATGGTTGGCATGCTAGGCCTTTAATTGCAACCTCTGCTTGGAAACTCACCGCCGATAACTCAGTGGCGGTTTCACACTGGGTCAACTCGAGTGGTCACTGGTACTTCAATTGA 1608 0.3961 MNLITFGPCVNEDPITFEEAEKSDIWRKAMNIELESIERNNTWQLTDLPKVAKGYAQRYGTDYKEVFAPVARWDTIRSLLAIAALNEWSVFQLDVKSAFLHGELSETVYVEQPPGNMIKGFKDSMMNTFDMTDLGKMRHFLGIEVTQSSEGIFVCQQKYAKDILEKFKMDKSNAVCSPIVTGTRLSKHDKGDEVNPTEFKQIIGSLMYLTATRPDLMFVVHMIARFVEHPVETHMMAAKRILIYIKGTLDLGILYKKGMKAELVAYSDSDYGGDIDDRKSTSGYVFMIGSGAVSWLSKKQPIVTLSTTEAEFIAAAHCVCQGIWMERILNYMGLKQQECFKVFCDNSSTIKLSKNPVLHGRSKHIDIRFHFLRNLSCEGAVELVHCSSQNQMADIMTKTLKLETFEKLRQGLGVCSSSSLNLNQQEVYLGKQICNMVACEGTDRVERHETLNQWRNRFGWAGFSSLHLGSNALLRASLLLSLFSRDGYKVEENDGCLMHGWHARPLIATSAWKLTADNSVAVSHWVNSSGHWYFN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4189g00001 535 CDD RNase_HI_RT_Ty1 264 400 - -
Trme4189g00001 535 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 51 118 IPR013103 -
Trme4189g00001 535 PANTHER GAG-POL-RELATED RETROTRANSPOSON 26 426 - -
Trme4189g00001 535 SUPERFAMILY DNA/RNA polymerases 56 370 IPR043502 -
Trme4189g00001 535 Pfam GRAS domain family 405 513 IPR005202 -
Trme4189g00001 535 ProSiteProfiles GRAS family profile. 361 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4189g00001 Trme-Chr4189 38 2212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4189g00001 118 376 Receptor kinase-like Gene Family AT4G23160 34.363 6.44e-50 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme4189g00001 GRAS 2.2e-30 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4189g00001 - - rcu:107262220 416.001