Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41849g00001 ATGGCCGGAGTTAATCAAAACGGCGTCGCCGAGTTTCCGGCGGTTCAGACTCACGGCGGACAATTCGTTCAGTACAACGTGTTCGGTAATCTCTTTGAGGTTACTGCTAAGTATCGTCCTCCGATCATGCCTATCGGTCGTGGTGCTTACGGAATCGTTTGTTCGCTGTTGAATACGGAGACGAATGAGTTGGTTGCTGTGAAGAAGATTGCGAATGCTTTTGATAATCACATGGATGCGAAGCGTACGTTGCGTGAGATTAAGCTTCTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNTTACCAAACTTTATTTAATTAA 330 0.403 MAGVNQNGVAEFPAVQTHGGQFVQYNVFGNLFEVTAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLXXXXXXXXXXXXXYQTLFN 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41849g00001 109 ProSiteProfiles Protein kinase domain profile. 39 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41849g00001 109 Gene3D Phosphorylase Kinase; domain 1 15 94 - -
Trme41849g00001 109 SUPERFAMILY Protein kinase-like (PK-like) 21 91 IPR011009 -
Trme41849g00001 109 Coils Coil 80 90 - -
Trme41849g00001 109 FunFam Mitogen-activated protein kinase 24 96 - -
Trme41849g00001 109 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 91 - -
Trme41849g00001 109 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41849g00001 Trme-Chr41849 378 883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41849g00001 11 90 MAP Kinase Gene Family AT3G45640 83.750 4.90e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme41849g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41849g00001 K20536 - gmx:547530 172.555