Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme418267g00001 GCTCCTAAACCCTCATCTGGGCCACACAAGTCTAGGGAATGTTTGCCATTGATTCTTATCTTGCGAAACAGATTGAAGTATGCTTTGACATACCGTGAAGTTATTGCTATTCTGATGCAACGCCATGTCCTTGTTGATGGCAAAGTTAGGACTGATAAGACTTATCCAGCTGGATTCATGGGTATGTATGTTGCTAGTTAG 201 0.4229 APKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMGMYVAS 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme418267g00001 66 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 62 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme418267g00001 66 Gene3D - 1 64 IPR036986 GO:0003723
Trme418267g00001 66 CDD S4 24 56 - -
Trme418267g00001 66 Pfam S4 domain 20 59 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme418267g00001 Trme-Chr418267 85 285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme418267g00001 1 62 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 88.710 3.34e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme418267g00001 K02987 - oeu:111408265 126.716