Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41818g00001 ATGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGTCAGCTGCTAGGAAAAGACGTGCTGTCAAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACGATTCAATATACTCACCTTCCTTGCCTTCAA 315 0.4032 MASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQ 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41818g00001 105 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 105 - -
Trme41818g00001 105 CDD PAZ_argonaute_like 9 105 - -
Trme41818g00001 105 Pfam PAZ domain 36 105 IPR003100 GO:0005515
Trme41818g00001 105 ProSiteProfiles PAZ domain profile. 10 105 IPR003100 GO:0005515
Trme41818g00001 105 SUPERFAMILY PAZ domain 4 105 IPR036085 GO:0005515
Trme41818g00001 105 Gene3D paz domain 3 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41818g00001 Trme-Chr41818 45 532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41818g00001 1 105 Eukaryotic Initiation Factors Gene Family AT5G43810 87.619 3.64e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41818g00001 K11593 - gmx:100816999 207.608