Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41742g00001 ATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGGCCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGTTACCTTGCTATTGTTGTGCTCAAGGTTGCAAGAACAATATCAATCATCCAAGAGCTAAGCCTTTGAAAGATTTTAGAACACTTCAAACTCACTACAAAAGAAAACATGGTACAAAACCATTTATGTGTAGAAAATGTGGGAAAACTTTTGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTTTGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGGTCTTTCGGAAAGGGACATAATCGACTTCCAAGTCTTGATGATCGAGCTTTCGAGGAGGAGAAGGAATGTGTTACTTGTTCTGATGAAAATGAAGTTGCTCGTACATGA 447 0.3848 MHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHNRLPSLDDRAFEEEKECVTCSDENEVART 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41742g00001 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 88 IPR013087 -
Trme41742g00001 148 FunFam Zinc finger protein WIP2 37 119 - -
Trme41742g00001 148 Gene3D Classic Zinc Finger 27 116 - -
Trme41742g00001 148 PANTHER ZINC FINGER PROTEIN WIP2 1 133 IPR043584 GO:0003700|GO:0010468
Trme41742g00001 148 SUPERFAMILY beta-beta-alpha zinc fingers 54 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41742g00001 Trme-Chr41742 380 826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41742g00001 1 138 C2H2 Transcription Factor Family AT1G08290 84.173 6.23e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme41742g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41742g00001 - - gmx:100802773 297.745