Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4171g00001 ATGATAAAAGGCGATTTGGTTGAGGATTCTGATTCCATGGCCTCTAAAGCTGAAAGCGAGAGTCCAACAGATACGCCACCATCACCGCCCAATAAAACAAAAGTCTATCATAGAAGGGGAGCAAAGGGGAAAAGTGAGCAAGGGGGTGGGTCTGCTATCTCAACCCAACCCAAGGAGATTAGAGGAGGAATAACAGAAGGGACAAATGGCGATGGAAAAGTGTTAGAGATAGTTGCAAAGAATGTATACAAGGATCCGGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACT 331 0.4562 MIKGDLVEDSDSMASKAESESPTDTPPSPPNKTKVYHRRGAKGKSEQGGGSAISTQPKEIRGGITEGTNGDGKVLEIVAKNVYKDPDDGRQRFLLELEFVQCLANPTYIH 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4171g00001 110 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 77 110 IPR038089 -
Trme4171g00001 110 MobiDBLite consensus disorder prediction 1 15 - -
Trme4171g00001 110 Pfam SOH1 91 110 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trme4171g00001 110 MobiDBLite consensus disorder prediction 1 70 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Trme4171g00001 Med31 8.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4171g00001 K15153 - nnu:104606371 70.8626