Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41673g00001 ATGATACTACAGGTGGAAGTGATTGAACCTGCAGTGAAAGGAACTGCTAATGTACTTGAAGCTTGTCTCAAAGCTAAAGTGGAACGTGTCGTTTTTGTATCATCTGGAGTTGCTGCTGTTATCAATCCTAATTTCCCGAAAGATAAAGTGATTGACGAGTCTTGTTGGTCTGATAAAGAATACTGCAAAAAAGCTAAGAACTGGTATTGTTATGCCAAGACTGAAGCCGAGGAGCAGGCCMTGAATTTCGCGAAAAGAACTGGGCTTGATGTTGTAAGCATTTGTCCTACCCTTGTTTTGGGGCCAATTTTACAGTCAACACTAAATTCAAGTAGCTTGGTTCTCATCAAACTTTTAAAAGCAAGATGTTGGACCAGATGCTCCAACATTGGATACGACATCCAGTGTGCTCTGTTTTCGCGTTTCTTGAAAG 433 0.4088 MILQVEVIEPAVKGTANVLEACLKAKVERVVFVSSGVAAVINPNFPKDKVIDESCWSDKEYCKKAKNWYCYAKTEAEEQAXNFAKRTGLDVVSICPTLVLGPILQSTLNSSSLVLIKLLKARCWTRCSNIGYDIQCALFSRFLK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41673g00001 144 Gene3D - 3 133 - -
Trme41673g00001 144 Pfam NAD dependent epimerase/dehydratase family 5 109 IPR001509 -
Trme41673g00001 144 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 120 IPR036291 -
Trme41673g00001 144 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41673g00001 Trme-Chr41673 102 809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41673g00001 4 110 Monolignol Biosynthesis Gene Families AT2G33590 64.815 3.26e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41673g00001 - - lja:Lj3g3v2171530.3 194.512