Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41618g00001 GTGACTCAGTTCTCTCCTTCGATACTTAAGTCAGAGGGGGTGCCTGTGTATCGCACTGTCCAGAGTTCTGGGCAATTTGTTATCACCTTTCCAAGGGCATACCACTGTGGCTTCAGCTGCGGCTTCAACTGTGCAGAGGCTGTGAATGCGGCTCCATATGATTGGTTTGTGCATGGTCAGAATGCTGTTGAAATTTACAGTCTGCAATGCCGTAAGACATCATTGTCCCATGATAAGTTGTTATTTGGATCTGCTAAGGAAGCTGTACATGCCCTTGCTGAGACAACTCTTCATGGAAAGGAAAATCTAAAATATTCAAATTGGAGAAATGCTTGTGGGAAAGATGGAGTTCTTACCAATGCAGTTAAGACAAGGATAAAAATAGAAAAAGAGAGGCTTGACCAGCTTCCGAATCATTTAAAGATGCTGGAGATGGACAACGACTTTGATTCGGTTGAGGAAAGGGAATGTTTCTCTTGTTTCTACGACTTGCACCTATCAGCTGTTGGTTGCGAGTGCTCTCCTGACAGCTATTCATGTCTTAGACACTTCAAGTTGTTTTGCTCATGTGAAATTGAGAAAAGATTTGTTCTGGTTCGTTATACTATGAATGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAGAACCACACGCAATAGAAGCRTGGGCAACMCGAAACAATGGAGTGGTTTCTGCTAGTGCTGAGGATGCTTGCATGAATGAACAAGATATGGAGAGAGCCATGTGCAAAACCAAGAATTGTGAAGAAGGGAAAAGCTTGCCTTCTTGTCCAGGAACTAATGAGAGGTCTAGCAGTCCTTACAGTCACATTTCTTCCGAGTTGGTCCATTTAGAGTCTCATCATGAAACTTT 875 0.4274 VTQFSPSILKSEGVPVYRTVQSSGQFVITFPRAYHCGFSCGFNCAEAVNAAPYDWFVHGQNAVEIYSLQCRKTSLSHDKLLFGSAKEAVHALAETTLHGKENLKYSNWRNACGKDGVLTNAVKTRIKIEKERLDQLPNHLKMLEMDNDFDSVEERECFSCFYDLHLSAVGCECSPDSYSCLRHFKLFCSCEIEKRFVLVRYTMNELSTLVEALEGEPHAIEAWATRNNGVVSASAEDACMNEQDMERAMCKTKNCEEGKSLPSCPGTNERSSSPYSHISSELVHLESHHET 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41618g00001 291 MobiDBLite consensus disorder prediction 264 280 - -
Trme41618g00001 291 ProSiteProfiles JmjC domain profile. 1 67 IPR003347 -
Trme41618g00001 291 MobiDBLite consensus disorder prediction 257 291 - -
Trme41618g00001 291 Pfam C5HC2 zinc finger 157 209 IPR004198 -
Trme41618g00001 291 Pfam JmjC domain, hydroxylase 2 49 IPR003347 -
Trme41618g00001 291 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 263 - -
Trme41618g00001 291 Gene3D Cupin 1 114 - -
Trme41618g00001 291 SUPERFAMILY Clavaminate synthase-like 12 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41618g00001 Trme-Chr41618 55 1033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41618g00001 1 230 JUMONJI Transcription Factor Family AT1G30810 60.345 7.98e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme41618g00001 zf-C5HC2 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41618g00001 K11446 - gmx:100784581 471.855