Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41468g00001 GATGTGTATTTGAAAAAAGCCGAATTCAATAGAGAACCATTATATGCCAAGTTTCGACTTCATGAGCCTTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATATTAGTGCATCCGTTGCAACCTCATGATCAATTCATTATATTCGCATCTGATGGGCTCTGGGAGCACTTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAAGAATCCTCGCGCTGGAATTGCAAGGAGGATGGTGAAAACTGCGCTTAAAGCAGCGGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAACAAAATTGATCGTGGAGTTCGGCGGCATTTCCATGATGATATAACTGTGATTGTTGTGTATCTCGATTCAAATCTCATGAGTAGGGCAAGCACCGTGAAGTTCCCTAGTATTTCTGTTAGAGGTGGCGGTGTTAACATTCCTCAAAACACATTGGCACCTTGTACTACTACAACAAATAATGGTGGYACTTAA 489 0.407 DVYLKKAEFNREPLYAKFRLHEPFKRPILSSEPSILVHPLQPHDQFIIFASDGLWEHFSNQEAVDIVQKNPRAGIARRMVKTALKAAAKKREMRYSDLNKIDRGVRRHFHDDITVIVVYLDSNLMSRASTVKFPSISVRGGGVNIPQNTLAPCTTTTNNGGT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41468g00001 162 CDD PP2Cc 24 120 IPR001932 -
Trme41468g00001 162 Gene3D - 1 131 IPR036457 -
Trme41468g00001 162 SUPERFAMILY PP2C-like 18 121 IPR036457 -
Trme41468g00001 162 ProSiteProfiles PPM-type phosphatase domain profile. 1 120 IPR001932 -
Trme41468g00001 162 PANTHER PROTEIN PHOSPHATASE 25 119 IPR015655 GO:0004722|GO:0006470
Trme41468g00001 162 Pfam Protein phosphatase 2C 19 89 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41468g00001 Trme-Chr41468 1 786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41468g00001 1 158 PP2C-type Phosphatase Gene Family AT4G38520 75.316 1.06e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41468g00001 - K01102 gmx:100790374 281.952