Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme414617g00001 ATGGTCGCACATGTTAGCGATTTTGGCATTTCCAAGCTCTTGGACGATGGACAGTCTAAAATTCATACCGGAACTTTAGCTACTATTGGCTATGTTGCACCAGAGTATGGTTCTAAGGGTATTGTTTCGATTAAAGGAGATGTATACAGCTATGGGA 157 0.414 MVAHVSDFGISKLLDDGQSKIHTGTLATIGYVAPEYGSKGIVSIKGDVYSYG 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme414617g00001 52 Gene3D Transferase(Phosphotransferase) domain 1 1 52 - -
Trme414617g00001 52 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 52 - -
Trme414617g00001 52 SUPERFAMILY Protein kinase-like (PK-like) 2 52 IPR011009 -
Trme414617g00001 52 ProSiteProfiles Protein kinase domain profile. 1 52 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme414617g00001 52 Pfam Protein tyrosine and serine/threonine kinase 2 52 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme414617g00001 Trme-Chr414617 1 244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme414617g00001 3 52 Receptor kinase-like Gene Family AT1G07650 54.000 1.22e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme414617g00001 PK_Tyr_Ser-Thr 3.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme414617g00001 - K13420 vvo:131644871 98.5969