Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41368g00001 ATGGGTCGCGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGAAAGATAACATTCCAAAAGAGAAAGAGTGGATTACTAAAAAAAGTGAATGAATTTGCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATGCTGAACCTGAAACATGGCCTAAAGATAAAAGAGAGGTACAAAAAATCCTTCAAAAGTACTACAACACAACAATGGATCGGCGTCCTAAGATCTATGATGCTCAAGAGTATTTCAAAGAAAGGATGAAAAAAGTCGAATTCGACATTTCCAAAGTGCGCAAAGAAATGTTAAAGATCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTAGAGAGGAACAAATGAG 401 0.3541 MGRGRISMELIQKEKSRKITFQKRKSGLLKKVNEFAILCDVDVCVILYAPNFEGQGYAEPETWPKDKREVQKILQKYYNTTMDRRPKIYDAQEYFKERMKKVEFDISKVRKEMLKIMYPTWDESFNSLREEQM 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41368g00001 133 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trme41368g00001 133 PANTHER MADS BOX PROTEIN 3 127 - -
Trme41368g00001 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trme41368g00001 133 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme41368g00001 133 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme41368g00001 133 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme41368g00001 133 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Trme41368g00001 133 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme41368g00001 133 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Trme41368g00001 133 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41368g00001 Trme-Chr41368 14 414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41368g00001 1 122 Type I MADS-box Gene Family AT5G55690 43.089 4.35e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme41368g00001 SRF-TF 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41368g00001 - - tpra:123913303 261.151