Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41337g00001 ATGACTGGGAGTACGTCAATGGTATTCACTCGGACTTGTGATTCATCGCGACTTCTGGCTTCAATTCTTACGAAACTTGGTTTGAAAGCCATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGAATCGAAGCCTTGGAACAGTTCAAGTCTGGGGAGTGCAAGATTCTCCTTTGTACTGACGTACTTAGTAGAGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGCTCCGGTGTTGCCATTTCTCTTTTGAACCAGTATGAAGTGGGGTGGTTCAAAAAGATAGAAGAACTTATGGGAGGCAAGAAGGTACCATTGTATACTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCAGCAGAAAAG 459 0.4423 MTGSTSMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRIEALEQFKSGECKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKVPLYTAQEEEVLLLKERVSEAKRSAEK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41337g00001 153 Gene3D - 1 153 IPR027417 -
Trme41337g00001 153 PANTHER RNA HELICASE 6 132 - -
Trme41337g00001 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 135 IPR027417 -
Trme41337g00001 153 SMART helicmild6 17 98 IPR001650 -
Trme41337g00001 153 Coils Coil 130 150 - -
Trme41337g00001 153 CDD SF2_C_DEAD 6 107 - -
Trme41337g00001 153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 138 IPR001650 -
Trme41337g00001 153 Pfam Helicase conserved C-terminal domain 3 98 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41337g00001 Trme-Chr41337 254 976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41337g00001 1 120 Eukaryotic Initiation Factors Gene Family AT3G19760 34.167 2.67e-24 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41337g00001 K14777 - gmx:100775796 224.942