Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme413081g00001 ATGGTTCACGAGTTGAGGCAGAAAACCAAAGATGATATCTTGGCTCATCTCAAAGATCTCAAGGCTGAACTCGCCTTGCTCCGTGTTGTTAAGGTCACCGGCGGTGCACCCAACAAGCTCTCCAAAATTAAGGTGGTAAGGCTTTCCATTGCTCAG 156 0.4808 MVHELRQKTKDDILAHLKDLKAELALLRVVKVTGGAPNKLSKIKVVRLSIAQ 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme413081g00001 52 PANTHER 60S RIBOSOMAL PROTEIN L35 2 52 IPR045059 GO:0000463|GO:0022625
Trme413081g00001 52 Gene3D - 1 52 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trme413081g00001 52 FunFam 60S ribosomal protein L35 1 52 - -
Trme413081g00001 52 SUPERFAMILY Ribosomal protein L29 (L29p) 2 52 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trme413081g00001 52 Pfam Ribosomal L29 protein 4 52 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trme413081g00001 52 NCBIfam 50S ribosomal protein L29 4 52 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme413081g00001 Trme-Chr413081 120 275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme413081g00001 2 52 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 80.392 8.02e-23 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme413081g00001 K02918 - jre:108996484 88.9669