Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41287g00001 CTTAGGGCCTTCATTGAAATCTGCAACTCCGGGAAATGTGGACTTTTCGGTGCTGGCGGGTTGATCATGTTTGACGTCAGCAATGTCACTGTTAGTTACCATGTGATGGATATCCTCCCTGTTGCAGTCATTGGAATCATAGGCGGTTTATTGGGAAGCCTTTATAATCATCTTCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTAGTCCTGTTTACATCAGTGTGTCAATATGGTCTCCCATATCTAGCAAAATGCACCCCTTGTGATTCATCACTTGCAGACTCAGAATYCGTCTGCCCCAGCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCCACTACAACGATCTTGCTACTCTTCTGCTTACCACTAATGACGATGCTGACTAA 450 0.4378 LRAFIEICNSGKCGLFGAGGLIMFDVSNVTVSYHVMDILPVAVIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSVCQYGLPYLAKCTPCDSSLADSEXVCPSNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41287g00001 149 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 148 - -
Trme41287g00001 149 PRINTS Plant CLC chloride channel signature 137 149 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme41287g00001 149 PRINTS Plant CLC chloride channel signature 10 17 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme41287g00001 149 Gene3D Clc chloride channel 4 144 - -
Trme41287g00001 149 SUPERFAMILY Clc chloride channel 22 98 IPR014743 -
Trme41287g00001 149 Pfam Voltage gated chloride channel 23 97 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41287g00001 Trme-Chr41287 61 947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41287g00001 1 148 Ion Channels AT5G40890 78.378 3.67e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41287g00001 K05016 - zju:107427939 229.18