Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41231g00001 TTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTATTTGCACATGCTTGGAATCATCTACAGAGACCTCAAACCCGAGAACGTGTTGGTGAGAGAAGATGGTCACATAATGCTATCAGATTTCGACCTCTCTCTAAGGTGTGCCGTCAGTCCGACTCTAGTAAAATCAGCAAACTCTAACTTAGAGACAAAAAGCTCAGGATACTGCGTTCAACCCGCTTGCATCGAACCAACTTGTGTTATTCAGCCAGACTGCATCAAACCTTCTTGTTTCACGCCACGTTTTCTACAAAGCAAGTCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACACCTCTGCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTCGTAGGCACGCACGAGTACCTTGCGCCTGAAATCATCAAAGGTGAAGGTCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTTTTGTTCGGTAGAACGCCATTCAAAGGTTCGGCAAATCGGGCAACTTTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCGGAATCTCCAAGTGTTAGCTTTGCTGCCAGGGACTTGATTAGGGGTTTACTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGAGCTACGGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCCACTCCTCCGGAAGTGCC 755 0.4623 FYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSANSNLETKSSGYCVQPACIEPTCVIQPDCIKPSCFTPRFLQSKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41231g00001 252 Gene3D Transferase(Phosphotransferase) domain 1 129 249 - -
Trme41231g00001 252 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41231g00001 252 SMART serkin_6 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41231g00001 252 Gene3D Transferase(Phosphotransferase) domain 1 1 46 - -
Trme41231g00001 252 FunFam serine/threonine-protein kinase D6PK-like 130 252 - -
Trme41231g00001 252 Pfam Protein kinase domain 132 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41231g00001 252 Pfam Protein kinase domain 1 51 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41231g00001 252 FunFam Serine/threonine-protein kinase OXI1 1 49 - -
Trme41231g00001 252 SUPERFAMILY Protein kinase-like (PK-like) 1 248 IPR011009 -
Trme41231g00001 252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Trme41231g00001 252 PANTHER FLIPPASE KINASE 1-RELATED 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41231g00001 Trme-Chr41231 283 1037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41231g00001 1 252 AGC Kinase Gene Family AT3G27580 81.028 4.63e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme41231g00001 Pkinase 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41231g00001 K08286 - gmx:100802402 480.33