Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41225g00001 ATGGAGGATAAAGAAATTAAATCATTTAAGGATCTAGGCTTATCGGATGAATTGATCGAAGCTTGTGACAAATTGGGCTGGAAGACTCCGCTAAAGATTCAAATACAAGCAATTCCCCCGGCTCTCCAAGGAAAAGATGTCATTGGACTTGCCCAAACGGGTTCTGGTAAAACTGCCGCTTTTGCTCTTCCTATATTGCATGCACTCTTAGAAGACCCAAACCCTTTTTTTGCTTGTGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTAAAGAACAGTTTGAAGCTCTAGGTTCTGTAATTAAGGTCAAGTGTGCTGTG 324 0.4167 MEDKEIKSFKDLGLSDELIEACDKLGWKTPLKIQIQAIPPALQGKDVIGLAQTGSGKTAAFALPILHALLEDPNPFFACVLSPTRELAIQIKEQFEALGSVIKVKCAV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41225g00001 108 Pfam DEAD/DEAH box helicase 32 105 IPR011545 GO:0003676|GO:0005524
Trme41225g00001 108 Gene3D - 1 108 IPR027417 -
Trme41225g00001 108 PANTHER RNA HELICASE 4 106 - -
Trme41225g00001 108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 107 IPR027417 -
Trme41225g00001 108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 108 IPR014001 -
Trme41225g00001 108 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 7 35 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41225g00001 Trme-Chr41225 138 722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41225g00001 6 99 Eukaryotic Initiation Factors Gene Family AT3G19760 39.362 7.83e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41225g00001 K14777 - oeu:111387968 174.866