Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41224g00001 ATGTCCAGTGTTGACGATGGCCATGATTTGAAGCACAAACTTAGAGAACTGGAGAATTCGTTGTTGGGGTCTGATGATTTCGATATTGTTGACAGTTACGGAAACTGCATGGAGACTAGACTCCACGGAGCATCTCCATCAGCTAAATATGATTGGGATCTAATTGCAGAAAACATTCAAAAGCTTGACTTGAAAGAAGTCCTCTTGCTATGTGCACAGGCTGTGTCTGATGGTGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTATCAGTCGCTGGAGATCCAATCCAGAGGTTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCTAGATTAGAATCGTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGTCCTGTATCAGATTTGTCCATATTTTAAGTTTGCATACATATCTGCAAATGCTGTTATTTCTGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATTGCACAGGGAACACAGTGGCTTCTACTTATTCAAGCGCTTGCAAACAGGCCTGGTGGACCACCTTTTATTCGGATAACAGGTGTCGACGATTCACAATCGTTTCATGCACGCGGTGGAGGACTTCAGATTGTAGGAGAAAGGATTTCAGACTATGCCAAGTCTTGCGGAGTTCCGTTTGAGTTCCACAACACTGCAATGTCTGGTTGYGAAGTCCAACGAGAAAATCTTAAAATTAGACCTGGAGAAGCCCTTGCCGTCAATTTTCCCTATTTTTTGCACCATATGCCGGATGAGAGTGTGAGCATAGAGAACCATAGAGACAGATTGTTGAGATTGGTTAAGAGTTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCATTTTTTCATAGGTTTGTGGAGAC 965 0.3927 MSSVDDGHDLKHKLRELENSLLGSDDFDIVDSYGNCMETRLHGASPSAKYDWDLIAENIQKLDLKEVLLLCAQAVSDGDIPTARGWMDNVLVKMVSVAGDPIQRLSAYLLEGLRARLESSXXXXXXXXXXXXXXXXXXXXXXXVLYQICPYFKFAYISANAVISEAMANESRIHIIDFQIAQGTQWLLLIQALANRPGGPPFIRITGVDDSQSFHARGGGLQIVGERISDYAKSCGVPFEFHNTAMSGCEVQRENLKIRPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVET 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41224g00001 322 Coils Coil 110 120 - -
Trme41224g00001 322 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 322 IPR005202 -
Trme41224g00001 322 Pfam GRAS domain family 64 321 IPR005202 -
Trme41224g00001 322 ProSiteProfiles GRAS family profile. 55 322 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41224g00001 Trme-Chr41224 73 1037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41224g00001 6 322 GRAS Transcription Factor Family AT4G17230 58.934 3.70e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme41224g00001 GRAS 3e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41224g00001 - - gmx:100776109 462.611