Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41092g00001 ACCATAACTCCATTAACAACTTCATTACCGGAGTCCCCTGCGTCTACCAATGGTAGTCCACTGAGCGAGGACTTTGACGGGGCCATCCAAGACCACCGGGAGGTTAAAAACAAATCAAAGAAAAGAAAGGTTATGCCCAAATTGATGGATCAGATAAAAGTTAGCTGTGAAAGTGGCCTTGAAGGACCACATGAAGATGGCTATAACTGGAGAAAATATGGTCAGAAAGATATCCTCAGTGCCAAACATCCAAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGAACTGCTGGGCCACAAAGCAAGTGCAGAGATCAGATGAAGATCCGACAATATTCGACATAACTTATAAAGGAAAGCATACCTGTTCTCAGGGAAACAATGCCATTGAACCATATAA 404 0.4332 TITPLTTSLPESPASTNGSPLSEDFDGAIQDHREVKNKSKKRKVMPKLMDQIKVSCESGLEGPHEDGYNWRKYGQKDILSAKHPRSYYRCTFRNTQNCWATKQVQRSDEDPTIFDITYKGKHTCSQGNNAIEPY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41092g00001 134 MobiDBLite consensus disorder prediction 1 26 - -
Trme41092g00001 134 FunFam WRKY transcription factor 53 50 127 - -
Trme41092g00001 134 Pfam WRKY DNA -binding domain 65 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme41092g00001 134 Gene3D WRKY domain 49 127 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme41092g00001 134 MobiDBLite consensus disorder prediction 1 23 - -
Trme41092g00001 134 SMART WRKY_cls 64 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme41092g00001 134 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 125 IPR044810 GO:0003700
Trme41092g00001 134 ProSiteProfiles WRKY domain profile. 59 122 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme41092g00001 134 SUPERFAMILY WRKY DNA-binding domain 63 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41092g00001 Trme-Chr41092 90 693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41092g00001 9 127 WRKY Transcription Factor Family AT4G11070 65.546 3.54e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme41092g00001 WRKY 6.1e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41092g00001 - - gmx:100815760 228.024