Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41078g00001 ATGGGGGGGATTGGCAAAAGCACCATTGCCAAAGTTGTCTACAATAATCTTTGTTATGAATTTGAAGAACAAAGCTTCCTTGCTAATATTAGAGAAGTTTGGGAGAAAGATAGCGGCCGAATCGGTTTACAAGAACAACTTCTTTCAGATATCCTCAAAACAAGAAAGATAAAGGTGCATAGTCTTGAGTGGGGAAAAGCTATGATCAAGGAACGACTTTGCACAAAACGGGCACTTGTTGTACTTGATGATGTTAGTGAGTTTGAGCAATTCAGTGCACTGTGCGGAAATAGAAATGGGATTGGTCCGGATAGTATAATAATCATCACAACAAGAGATGTTCGTCTACTAGATATTCTTGGAGTTGACTTTATTTATGAAGCCGATGGATTGGATCTAGATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGGGAGGGAAGTCCAACAAAAGGCTTCCTTATTCTCTCAAGAGATGTAGTTGCCTATTGTGGTGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTCAAGAGAAGAAAACAAGAGTGGCACAGTGTATTATCAAAGCTAAAAAAGATACCCAATGATCAAATACACGATAAACTAAAAATAAGTTTCGATGGTTTAAGGGATCGTATGGAGAAGGATATATTTCTTGATATCTGTTGTTTCTTTATCG 691 0.3821 MGGIGKSTIAKVVYNNLCYEFEEQSFLANIREVWEKDSGRIGLQEQLLSDILKTRKIKVHSLEWGKAMIKERLCTKRALVVLDDVSEFEQFSALCGNRNGIGPDSIIIITTRDVRLLDILGVDFIYEADGLDLDESLELFSWHAFREGSPTKGFLILSRDVVAYCGGLPLALEVLGSYLFKRRKQEWHSVLSKLKKIPNDQIHDKLKISFDGLRDRMEKDIFLDICCFFI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41078g00001 230 Gene3D - 1 123 IPR027417 -
Trme41078g00001 230 Pfam NB-ARC domain 1 199 IPR002182 GO:0043531
Trme41078g00001 230 PRINTS Disease resistance protein signature 72 86 - -
Trme41078g00001 230 PRINTS Disease resistance protein signature 165 179 - -
Trme41078g00001 230 Gene3D - 130 214 IPR042197 -
Trme41078g00001 230 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 229 IPR044974 GO:0006952
Trme41078g00001 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41078g00001 Trme-Chr41078 24 714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41078g00001 1 229 WRKY Transcription Factor Family AT5G45050 36.522 4.10e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41078g00001 - - vvo:131619861 378.252