Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41058g00001 ATGACCGGAAGTTTCAAGGACAAGGTGGGTGAAGGAGGTTTTGGTTCTGTTTATAGAGGAAAGTTAAGCAGTGGGCCATTTGTTGCCATAAAGATGTTGGGTAAACCTAAGGGTAATGGACAAGATTTCATTAGTGAAGTCGCAACCATAGGAATAATACACCATGCCAATGTGGTGAGACTTATTGGATTTTGTTTTGAGAGATCAAAACGTGCTCTTGTTTATGAATTCATGCCGAACGGATCTTTAGATAAATATATTTCCTCTAAAGGGGATGCTATCTTCCTAACTTCTAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGACTTTGGTCTTGCAAAACTTTATCCTAATGACAATAGTATTGTCACTTTAACTGCCGCACGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTGTCCTACAAGGCCGAT 483 0.3913 MTGSFKDKVGEGGFGSVYRGKLSSGPFVAIKMLGKPKGNGQDFISEVATIGIIHHANVVRLIGFCFERSKRALVYEFMPNGSLDKYISSKGDAIFLTSKKMYEISLGVARGIAYLHQDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKAD 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41058g00001 161 Gene3D Transferase(Phosphotransferase) domain 1 2 117 - -
Trme41058g00001 161 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme41058g00001 161 SUPERFAMILY Protein kinase-like (PK-like) 5 161 IPR011009 -
Trme41058g00001 161 Pfam Protein tyrosine and serine/threonine kinase 5 117 IPR001245 GO:0004672|GO:0006468
Trme41058g00001 161 Gene3D Transferase(Phosphotransferase) domain 1 118 161 - -
Trme41058g00001 161 PANTHER RUST RESISTANCE KINASE LR10-RELATED 118 161 IPR045874 GO:0004672
Trme41058g00001 161 ProSiteProfiles Protein kinase domain profile. 3 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41058g00001 Trme-Chr41058 125 692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41058g00001 1 161 Receptor kinase-like Gene Family AT5G38280 45.503 3.06e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme41058g00001 PK_Tyr_Ser-Thr 2.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41058g00001 - - tpra:123893228 294.278