Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41012g00001 GGCGCTGTTGGTAAGCTTTTCTTCTGCCACGTTTGCAGTCGGAGAGTTACCTGCTCCGATGATTCCGAACCTTTCTGCCCAATCTGCTTCCAAGGTTTCCTCGAAGAATGCAATCAAATTCCCGAACCTAACCCTAACCCTAGCTTTCACTTCAGCTTCAACAACGACGATTCCTCCGATACCGATTCCGATTTCCCTTTCCATCCATTCGCTCTTCTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTTCGACCCGTTCACTTTCCTTCAGAATCACCTTCACGGCCTTCACGCCGACGGTGCCAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGTGTACGCGTTCCCTCTAGCTTTGGCGATTACTTTCTCGGTCCTGGCCTTGAACAATTGATTCAGCAACTCGCCGAGAATGATCCTAACCGTTATGGAACACCGCCNNTNNNNNNNNNNTNNNNNNNNNNTCTTCCGACGGTAACTGTTGATGATGAATTGTTGAACTCGGAATTGAACCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTTGCAGGTGAAGCAAATGCCTTGCAAGCATGTGTATCATGATGACTGCTTGCTTCCATGGCTTGAATTGCATAATTCTTGCCCTGTTTGTCGATATGAATTGCCAACTGATGATGCTGATTATGAGAATCGTGGTAGGGGTAATGATGGTGATGGGTTGAGGTCTGTTGTCGATGGTAATAGTACTGGTAGTGGTGCTGGTAATGGTGGTGGAGGAACGGGCAACAGACCTGTCCACAGGACTTTTAGAATATCTCTGCGGTATCCTTTCAGTGCTGGTGACTCTGCTCAGGACTCTGGTGAAAGGGGATTGGGAAATAGGCAAGAGGATTTGGATTGA 927 0.4337 GAVGKLFFCHVCSRRVTCSDDSEPFCPICFQGFLEECNQIPEPNPNPSFHFSFNNDDSSDTDSDFPFHPFALLXXXXXXXXXXXXXXXXXXFDPFTFLQNHLHGLHADGANIQFEINHPSESEPGVRVPSSFGDYFLGPGLEQLIQQLAENDPNRYGTPPXXXXXXXXLPTVTVDDELLNSELNQCAVCQDEFEKGLQVKQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDADYENRGRGNDGDGLRSVVDGNSTGSGAGNGGGGTGNRPVHRTFRISLRYPFSAGDSAQDSGERGLGNRQEDLD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41012g00001 308 MobiDBLite consensus disorder prediction 234 308 - -
Trme41012g00001 308 Pfam Ring finger domain 184 227 IPR001841 -
Trme41012g00001 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 231 - -
Trme41012g00001 308 SUPERFAMILY RING/U-box 169 233 - -
Trme41012g00001 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 243 IPR013083 -
Trme41012g00001 308 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Trme41012g00001 308 SMART ring_2 186 226 IPR001841 -
Trme41012g00001 308 FunFam E3 ubiquitin-protein ligase RING1-like 147 233 - -
Trme41012g00001 308 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41012g00001 Trme-Chr41012 112 1038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41012g00001 130 242 C3H Transcription Factor Family AT5G01980 44.248 1.58e-27 110