Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41011g00001 CAAATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGTTCAAAAGAAGAACAAGAAAGAAAACCAAAACCTCAGCCAGAACATGCTTTGAACTGTCCAAGATGTAACTCAACCAACACCAAATTTTGTTACTACAACAATTATAGTCTTACTCAACCAAGATACTTTTGCAAATCTTGTAGAAGATATTGGACAAAAGGTGGAACATTAAGGAATGTTCCTGTTGGTGGTGGATGTCGAAAAAACAAACGATCATCATCGTCTTCGTCTTCAAAGAGGGTTCAAGATCAAAACCAAACATTCACACCTAATCTTAGTGCTTTTAATAATCTTCCTCTTTCATCTTATGATCATAATTCTAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAACAATCATGTGGACAAATGGGTTATGATGATAATGATCTTTCAATTTTGGGTAATCCTCAAAATCATGGATTTATGGATGCAATTAGAAGTGGTTTATTTCTTGGAAATGGATTACATTATAATAACAATGTTCAAAATATGTATGGTGGGTATGGAAATGGAGGAGATAATGGTGAAGTGAATAGTTGCAACAACAATAACAACAATGCTTGTGGGGTTAGTGAAGAGATTATGTTTCCTTATGATCAAGAAATGAACAATTGCATTGCAACAACTAACATGAAACAAGAACAAAGTGAAAGTAAGGTTTTTGGTGGTTTTCCATGGCAACTAAATGGAGGAACAAACATGGTTGAGCTTGAATCAACAAGAGCAAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGGCTTCTTCATAGTCCCCTAATGTAG 834 0.3489 QMSSQSSMENMLGCSKEEQERKPKPQPEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRVQDQNQTFTPNLSAFNNLPLSSYDHNSNDFALALARLQKQSCGQMGYDDNDLSILGNPQNHGFMDAIRSGLFLGNGLHYNNNVQNMYGGYGNGGDNGEVNSCNNNNNNACGVSEEIMFPYDQEMNNCIATTNMKQEQSESKVFGGFPWQLNGGTNMVELESTRASWNNGFTSPWQGLLHSPLM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41011g00001 277 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Trme41011g00001 277 MobiDBLite consensus disorder prediction 82 106 - -
Trme41011g00001 277 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Trme41011g00001 277 MobiDBLite consensus disorder prediction 14 28 - -
Trme41011g00001 277 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Trme41011g00001 277 MobiDBLite consensus disorder prediction 1 30 - -
Trme41011g00001 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 216 IPR045174 GO:0003700|GO:0006355
Trme41011g00001 277 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41011g00001 Trme-Chr41011 154 987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41011g00001 29 277 C2C2-Dof Transcription Factor Family AT2G28510 46.183 2.00e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme41011g00001 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41011g00001 - - gmx:778106 306.605