Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41008g00001 AATGCTAGCAATCGAGAACTGTGTCCTCCGAATGAAGCTAGGCTCTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAACAAGGCTCCTTGTCAGCTTCTTCAATTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCTGGTTCAGGAGTTACGGTAGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAACTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTAGAGAATCATCTTTTCAGAAGTGAGTTTCTTCCTTAA 453 0.4371 NASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRSEFLP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41008g00001 150 FunFam Serine/threonine-protein kinase BIK1 16 133 - -
Trme41008g00001 150 Gene3D Phosphorylase Kinase; domain 1 24 133 - -
Trme41008g00001 150 PANTHER OS01G0588500 PROTEIN-RELATED 30 145 - -
Trme41008g00001 150 Pfam Protein tyrosine and serine/threonine kinase 52 145 IPR001245 GO:0004672|GO:0006468
Trme41008g00001 150 ProSitePatterns Protein kinases ATP-binding region signature. 54 86 IPR017441 GO:0005524
Trme41008g00001 150 ProSiteProfiles Protein kinase domain profile. 48 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme41008g00001 150 MobiDBLite consensus disorder prediction 1 28 - -
Trme41008g00001 150 SUPERFAMILY Protein kinase-like (PK-like) 22 147 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme41008g00001 Trme-Chr41008 3 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41008g00001 36 144 Glycoside Hydrolase AT3G07070 54.128 6.16e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme41008g00001 PK_Tyr_Ser-Thr 2.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41008g00001 - - gmx:100305441 301.597