Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40g00001 ATGATAGGAATTTGGATATTATGGGGTGCTCAAGTCCCACATTCAGTAACCTCAGTGCTAACACTAGAAGAGTCAGCGCTAGACACTGATCAAGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAGATAATCAAGAGTTATAACGGGGAAACGGAGAAATTAGGGAGATGTGAACAGTTCTTCGTGGAATTGATGAAAGTACCACGGGTAGAATCTAAGCTCAGGGTCTTTTCATTCAAGATTCAGTTCCATTCACAGATCAGGAATTCTGTCAAATTGAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCGGCTATTGGATTCAGATTAGAGACCCTTCTTAAACTCACTGAGACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTGGATGACAAATTACCAGAAGTTTTAGACTTCTCTAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTCTGGCGGAGGAGATGCAAGCTATAAACAAAGGGTTAGAGAAAGTTGTACAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAACATTCCGCAAGAAATTGAAAGAGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGATCATTGGCTTCACTATATTCTGCTGTGGGCAGGAACGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGTCCATTTGAGCAAGTTGTCACAACTTTGCTCAACTTCACTGGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCAAGAGCTTGAAATGAAGAAAACAGCAGAAAGGGCATGTATAGTGGCACATATACTAGTAGCTGGCATTGAGAAACGAAGAACTGCTTTACACTGCAAAGCTGAGGTGACTCTTTGA 954 0.4099 MIGIWILWGAQVPHSVTSVLTLEESALDTDQVENLIKFCPTKEEMEIIKSYNGETEKLGRCEQFFVELMKVPRVESKLRVFSFKIQFHSQIRNSVKLKRIMQTILTLGNALNQGTARGSAIGFRLETLLKLTETRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKEFLCSAEAEVRSLASLYSAVGRNVDALILYFGEDPSRCPFEQVVTTLLNFTGMFNKAHEENCKQQELEMKKTAERACIVAHILVAGIEKRRTALHCKAEVTL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40g00001 317 Coils Coil 270 290 - -
Trme40g00001 317 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 295 IPR015425 -
Trme40g00001 317 Coils Coil 176 196 - -
Trme40g00001 317 PANTHER FORMIN-J 12 290 - -
Trme40g00001 317 Pfam Formin Homology 2 Domain 16 269 IPR015425 -
Trme40g00001 317 Gene3D Formin, FH2 domain 10 293 IPR042201 -
Trme40g00001 317 SMART it6_source 2 317 IPR015425 -
Trme40g00001 317 SUPERFAMILY Formin homology 2 domain (FH2 domain) 17 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40g00001 Trme-Chr40 1107 4493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40g00001 16 288 Protein tyrosine phosphatase (PTP) family AT5G58160 73.103 2.72e-144 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40g00001 - - cam:101513310 485.337