Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40973g00001 ATGGGATCTGAAGCTATGATTCCAGAATGGGCATCGGAGGCTTGCATAATGGGAATTGACGAAGCTGGAAGAGGCCCTGTTCTTGGTCCCATGGTCTACGGTGCTTTATACTGTCCTCTCTCCTACCAGAATACCCTTGCTACTCTCAATTCCAAGACACTGAAAGAAGAGAAGAGGGAAGAATTATTTGAATCTTTGAAAACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCTAAGGAACTCTCTGCTAAAATGCTCAACAAGAATAAAATAAACTTGAATGAGATATCACATGATTCTGCCATGGGCCTCGTTGATCGGGTGCTCAAAATGGGAGTGCTTCTAACTCAGGTGCACATAGCACATTTTATACGTGACTTTGCGGACACTGTGTTAAGAGTCCTACATCCGATGTGA 426 0.4343 MGSEAMIPEWASEACIMGIDEAGRGPVLGPMVYGALYCPLSYQNTLATLNSKTLKEEKREELFESLKTNDSIGWAVDVIDPKELSAKMLNKNKINLNEISHDSAMGLVDRVLKMGVLLTQVHIAHFIRDFADTVLRVLHPM 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40973g00001 141 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 123 IPR001352 GO:0003723|GO:0004523
Trme40973g00001 141 SUPERFAMILY Ribonuclease H-like 15 122 IPR012337 -
Trme40973g00001 141 Gene3D - 2 136 IPR036397 GO:0003676
Trme40973g00001 141 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 141 IPR024567 GO:0004523
Trme40973g00001 141 Pfam Ribonuclease HII 17 125 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40973g00001 Trme-Chr40973 247 925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40973g00001 1 123 Core DNA Replication Machinery Family AT2G25100 61.905 9.86e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40973g00001 K10743 - psat:127135270 219.55