Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme409301g00001 ATGAAGAGAAAAACAAATCGTGGGTTCTGGAAGGCAACGGGACATGATCGTAAAATTAAGTCTGGAGGAATCTCGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCGTGCACCAAATGGGAAGAGGACTAATTGGCTTATGCACGAGTATCGTCCCACCCTGAAGGAGCTTGATG 181 0.4475 MKRKTNRGFWKATGHDRKIKSGGISIGMKKTLVFYSGRAPNGKRTNWLMHEYRPTLKELD 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme409301g00001 60 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 53 - -
Trme409301g00001 60 Gene3D NAC domain 1 60 IPR036093 GO:0003677|GO:0006355
Trme409301g00001 60 Pfam No apical meristem (NAM) protein 2 53 IPR003441 GO:0003677|GO:0006355
Trme409301g00001 60 SUPERFAMILY NAC domain 2 57 IPR036093 GO:0003677|GO:0006355
Trme409301g00001 60 ProSiteProfiles NAC domain profile. 1 60 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme409301g00001 Trme-Chr409301 13 193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme409301g00001 3 60 NAC Transcription Factor Family AT4G35580 74.138 4.99e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme409301g00001 NAM 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme409301g00001 - - gmx:100777071 106.686