Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme409011g00001 ATGAGGCAGCTTGATTATGGTGTTGATATTGCGGTTGGCACGCCTGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGGTTTCAGGAGGATGTGGAGAAGATCTTGGAGAGATTGCCTGCCAAGAGACAAACTCTTATGTTTTCAGCAACAATGCCAACTTGGATAAAGCAGTTAACACGAAATTACCTAA 253 0.4071 MRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYL 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme409011g00001 84 Gene3D - 1 84 IPR027417 -
Trme409011g00001 84 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 84 - -
Trme409011g00001 84 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 84 IPR027417 -
Trme409011g00001 84 CDD DEADc 1 84 - -
Trme409011g00001 84 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 84 IPR014001 -
Trme409011g00001 84 Pfam DEAD/DEAH box helicase 2 78 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme409011g00001 Trme-Chr409011 1 253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme409011g00001 2 84 Eukaryotic Initiation Factors Gene Family AT1G72730 44.578 2.99e-19 78.2