Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4085g00001 TTTAGCAGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGATGCCTTATGGTCAGATGGGATGCGGATATTGAGACTAATCAACAAGATAGAGTCTCTTCTTGGGAGATTGATCCATCTAATTCTCTCCCTCCCTTAAACATTCAATCTTCTCGAAGGCTGAAGAAACTCCGGACGGGTCTTCAAGCTGACTCCACCAGTCACCTTATCACTGCAGGAGACGGCGGGTTTATGGACTTTGACGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACGCGGTAACTAAGAAGACAGAATTTGATATCAATTCTCTAAGTCATTCTCATACTAATCTTGCATCAACTGGAGCAAGAAAGATTACTTCTACCGAGTTTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACGAACCGGTTTCCTATGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCAGTTACACAAATTACAACTTGCATCAAGCAACAAAACCTAACTTTCACTCTTTAGGTTCAGAAATTCTTCAAAATTCCTATTTTCCTTATGGCCAAGGTAGCAGCATTTTGTGCTCTAAACCCACCAATTTCAACCTAGAGAATGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTATCAAGTTTCGCAATCCAAAACGAGCAGAAGCTGCAGGACAATATTTCGGCTGCTACTTCTCTAGGCGCAAACATGAGGATTTCAAATGATGAAAATTTTAAGGGGAAGGTAAATCCTTGCAAACTATTTGGATTTTCCTTGTCTGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAATTGGAAGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTTTAAGAGATCCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCATGAGTTTTGTGATATGGTATCCAAAATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAACCAGAGCTGTTTGGAACAAACACCACTGATTATGGAGGCTTCAAAGTCATCCTCAGTAGGTCAACCAGATTCTTCTCCAACAGTAATTAGAATCTAG 1365 0.4051 FSSGIVIGMSDLDPYKWPKSKWRCLMVRWDADIETNQQDRVSSWEIDPSNSLPPLNIQSSRRLKKLRTGLQADSTSHLITAGDGGFMDFDESIRSPKVLQGQEKTSFMSLYYGCDAVTKKTEFDINSLSHSHTNLASTGARKITSTEFTRVHPSSYAGFTETNRFPMVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYNLHQATKPNFHSLGSEILQNSYFPYGQGSSILCSKPTNFNLENVPFNTPSAQIGTLKNEVGLSSFAIQNEQKLQDNISAATSLGANMRISNDENFKGKVNPCKLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLIGRAVDLSRLSSYNDLVSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPTVIRI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4085g00001 454 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 415 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme4085g00001 454 FunFam Auxin response factor 321 415 - -
Trme4085g00001 454 Gene3D - 322 415 - -
Trme4085g00001 454 Gene3D - 1 53 - -
Trme4085g00001 454 SUPERFAMILY CAD & PB1 domains 329 406 - -
Trme4085g00001 454 ProSiteProfiles PB1 domain profile. 326 408 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4085g00001 Trme-Chr4085 164 2267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4085g00001 3 454 B3 DNA Binding Superfamily AT5G60450 46.320 2.20e-116 357