Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40830g00001 ATGGGTGGGGTGGGAAAAACCACTTTAGCTCAATCTGTGTACAACCATACCAGTATAGTGCAGAAATTTGATGTTCAAGCATGGGCTTGTGTTTCTGATCATTTTGATGTTTTGAAGGTTACAAAGACCATTGCGGAGGAAGTAAGAAGTGCATGTAACACAAATAACTTGAATATCCTTCATCGAGATTTGAAGGAGAAACTGGCTGGAAAGAAGTTCTTAATTGTTTTGGATGATGTCTGGACTGAAGATTATGACAGTTGGTATTCTCTTTTAAGGCCTTTTCAATACGGAACAATGGGAAGTAAAATTGTTGTAACAACCCGAATTGAAAAAGTTGCTTCTATGGTCCAAACTTTTCAACCTTACCATCTTAAGCAATTGTCTGATGAAGATTGTTGGTCAGTGTTTGCAAACCATGCATGCTTTTCTCCAGAACAAACCAATGAGAATATGGTTATCCAAAACATTGGCATAGAGATTGTTAAAAAATGCAAGGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGAG 541 0.3845 MGGVGKTTLAQSVYNHTSIVQKFDVQAWACVSDHFDVLKVTKTIAEEVRSACNTNNLNILHRDLKEKLAGKKFLIVLDDVWTEDYDSWYSLLRPFQYGTMGSKIVVTTRIEKVASMVQTFQPYHLKQLSDEDCWSVFANHACFSPEQTNENMVIQNIGIEIVKKCKGLPLAAQSLGGLLR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40830g00001 180 Gene3D - 1 121 IPR027417 -
Trme40830g00001 180 PANTHER DISEASE RESISTANCE PROTEIN RP 1 180 IPR044974 GO:0006952
Trme40830g00001 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 180 IPR027417 -
Trme40830g00001 180 Pfam NB-ARC domain 1 180 IPR002182 GO:0043531
Trme40830g00001 180 Gene3D - 127 180 IPR042197 -
Trme40830g00001 180 PRINTS Disease resistance protein signature 165 179 - -
Trme40830g00001 180 PRINTS Disease resistance protein signature 67 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40830g00001 Trme-Chr40830 463 1003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40830g00001 3 180 WRKY Transcription Factor Family AT4G12020 25.258 6.35e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40830g00001 - - cam:101511080 289.656