Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4080g00001 ATGGATGCTAAATTTGATGGAAAAAATAAGCATTTGTATGGAACAGTAGTGTCTGAGATGAAGAGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGAAATCGTCAACTTTTCCCGGTTGATCCCGAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGCTTCTGGTGAAAGAAGTAGAGAATTGGAGAAGAGAAGGAGGGATTTTGTTGGTGAAGGGTTGGAGATGAATGATGATATTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGAAGAAAAAAGTGGTAAGAAAACGAAGATTGCTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAGCGCAAAGGATTACCATCGTCGTCACAAAGTTTGTGATGTTCATTCTAARGCTAGTAAAGCGCTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTGATGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCAGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATGGTGCTGAAGTTAATGGAGGCCCTCCGAACGAAGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTACTAAGGATACTGTCCAATATGCATTTTAATAGGAGTGTTTCTTGCCGCGACTGCGCTGGTGCGGCGCAGAGCAGTTGCTGGGGGCCACAGGTGGTTTTGCAGCATGAACGTTGCAGTGTGGGTCGTGTCCATTGGCACACCAAATCTGCTACAGAATTATGA 885 0.4362 MDAKFDGKNKHLYGTVVSEMKSGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLFPVDPEVSQNVDASNNLASGERSRELEKRRRDFVGEGLEMNDDIGSLNLNLGGQVYPIMEGEEKSGKKTKIAVTTSNRAVCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEERGSSYLLMSLLRILSNMHFNRSVSCRDCAGAAQSSCWGPQVVLQHERCSVGRVHWHTKSATEL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4080g00001 294 FunFam Squamosa promoter-binding-like protein 14 133 203 - -
Trme4080g00001 294 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Trme4080g00001 294 MobiDBLite consensus disorder prediction 206 231 - -
Trme4080g00001 294 Pfam SBP domain 142 215 IPR004333 GO:0003677
Trme4080g00001 294 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Trme4080g00001 294 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Trme4080g00001 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 243 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4080g00001 Trme-Chr4080 582 2053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4080g00001 20 253 SBP-box Gene Family AT3G60030 50.000 6.27e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme4080g00001 SBP 8.2e-30 No_clan