Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40758g00001 GGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCCACTAATGATTTCTCGAATCTTATTGGGAAAGGTGGATTTGGAGATGTTTACAAAGGTGAGTTGCCGGATCATCGTGTTGTTGCGGTGAAATGCTTAAAGAATGTTACTGGTGGTGATGCGGAATTTTGGGCGGAAGTAACCATCATTGCAAGGATGCATCACTTGAACTTGGTTCGATTATGGGGCTTCTGCGCCGAGAAAGGTCAAAGGATACTTGTTTATGAATACATCCCRGGTGGATCGTTGGATAAGTATCTCTTCAGAGTCAAATCTAAAAAGGGKAGCRGCGAAYCTGAATCTGATATAAGTCATGATACTAGTTCCGATCCAAGTATCTTAGAGAAACCTGTTTTGGATTGGAACATGAGGTATAGAATTGCTCTCGGTATGGCGAGGGCTATTGCATACCTACATGAGGAGTGTTTAGAATGGGTTTTGCATTGTGATATAAAGCCAGAAAACATTCTCTTAGGTGATGATTGTTGCCCTAAGATATCCGATTTTGGATTGGCGAAACTAAGGAAAAAAGAAGACATGGTGACTATGTCAAGAAGGAGAGGAACTCCTGGTTATATGGCACCTGAATGGATAACAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGCTATTGGAGCTTGTGAGTGGAGTGAGGAACTTCGAGATTCAAGGCTCCGTGGCGAGGAGCGATGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAGATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAAAACACATTTTCAATTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGGCCTGAATCAAGGCCAACAATGGGAAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGACCCTAAGAAACCAACTGTTTTCTTCCTTGGGGAAGAGTAG 1011 0.4164 GGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSKKGSXEXESDISHDTSSDPSILEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKTHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40758g00001 336 FunFam S-receptor-like serine/threonine-protein kinase 1 90 - -
Trme40758g00001 336 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Trme40758g00001 336 ProSitePatterns Protein kinases ATP-binding region signature. 22 44 IPR017441 GO:0005524
Trme40758g00001 336 SUPERFAMILY Protein kinase-like (PK-like) 3 316 IPR011009 -
Trme40758g00001 336 PANTHER OS07G0415500 PROTEIN 2 331 - -
Trme40758g00001 336 ProSiteProfiles Protein kinase domain profile. 16 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme40758g00001 336 SMART serkin_6 16 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme40758g00001 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Trme40758g00001 336 Gene3D Transferase(Phosphotransferase) domain 1 92 327 - -
Trme40758g00001 336 FunFam Serine/threonine-protein kinase 91 327 - -
Trme40758g00001 336 Pfam Protein kinase domain 20 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40758g00001 Trme-Chr40758 1 1011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40758g00001 4 328 Receptor kinase-like Gene Family AT4G18250 39.458 6.42e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme40758g00001 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40758g00001 - - gmx:100775518 605.905