Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme407382g00001 ATGTTATTATTGCAGGCACTTCCTAAAACATTTTCTAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCAAGTGGAGTGTTGTGGAATATAGGGTTGAAAACTAAAGATGATACTGTTTACTTTGTTGACGGTTGGGAAAGATTCGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTCTGTTTAAGTACAATGGGGAATCACTCTTTGAGGTTTTCATCTTTGATGGAGAAA 250 0.352 MLLLQALPKTFSNNVKKKLPENVTLKGPSGVLWNIGLKTKDDTVYFVDGWERFVKDHSLKENDFLLFKYNGESLFEVFIFDGE 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme407382g00001 83 Pfam B3 DNA binding domain 7 79 IPR003340 GO:0003677
Trme407382g00001 83 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Trme407382g00001 83 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 77 IPR044837 -
Trme407382g00001 83 SUPERFAMILY DNA-binding pseudobarrel domain 6 81 IPR015300 -
Trme407382g00001 83 CDD B3_DNA 7 81 IPR003340 GO:0003677
Trme407382g00001 83 Gene3D - 4 83 IPR015300 -
Trme407382g00001 83 SMART B3_2 2 83 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme407382g00001 Trme-Chr407382 34 283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme407382g00001 6 83 REM Transcription Factor Family AT4G33280 54.430 3.63e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme407382g00001 B3 3.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme407382g00001 - - tpra:123885991 155.221